A platform for the biomedical application of large language models
Nature Biotechnology· 2025DOI Sebastian Lobentanzer, Shaohong Feng, Noah Bruderer, Andreas Maier, null null, Adrián G. Díaz, Amy Strange, Anis Ismail, Anton Kulaga, Aurelien Dugourd, Barbara Zdrazil, Bastien Chassagnol, Cyril Po
A Regulatory Roadmap for Repurposing: Comparing Pathways for Making Repurposed Drugs Available In The EU, UK, And US
Journal of Law, Medicine & Ethics· 2025DOI Mirre Scholte, Liam Bendicksen, Sabine E. Grimm, Teebah Abu-Zahra, Bianca Pauly, Manuela Joore, Aaron S. Kesselheim
A system perspective on drug response
British Journal of Pharmacology· 2025DOI Vlad Elgart, Joseph Loscalzo
Can We Make Health Economic Decision Models as Simple as Possible, But Not Simpler? Introducing SMART tool
PharmacoEconomics· 2025DOI Teebah Abu-Zahra; Sabine Grimm; Mirre Scholte; Manuela Joore
Can We Make Health Economic Decision Models as Simple as Possible, But Not Simpler? Introducing SMART tool
PharmacoEconomics· 2025DOI Teebah Abu-Zahra, Sabine E. Grimm, Mirre Scholte, Manuela Joore
De Novo exposomic geospatial assembly of chronic disease regions with machine learning & network analysis
Andrew Deonarine, Ayushi Batwara, Roy Wada, Puneet Sharma, Joseph Loscalzo, Bisola Ojikutu, Kathryn Hall
Digital twins as global learning health and disease models for preventive and personalized medicine
Xinxiu Li, Joseph Loscalzo, A. K. M. Firoj Mahmud, Dina Mansour Aly, Andrey Rzhetsky, Marinka Zitnik, Mikael Benson
DRaCOon: a novel algorithm for pathway-level differential co-expression analysis in transcriptomics
BMC Bioinformatics· 2025DOI Fernando M. Delgado-Chaves, Ferdinand Spurny, Tanja Laske, Mhaned Oubounyt, Jan Baumbach
Exploring common mechanisms of adverse drug reactions and disease phenotypes through network-based analysis
Cell Reports Methods· 2025DOI Farzaneh Firoozbakht, Maria Louise Elkjaer, Diane E. Handy, Rui-Sheng Wang, Zoe Chervontseva, Matthias Rarey, Joseph Loscalzo, Jan Baumbach, Olga Tsoy
Extracellular vesicle-associated transcriptomic and proteomic biomarkers show in vitro potential for vandetanib treatment monitoring in anaplastic thyroid cancer
Scientific Reports· 2025DOI Christian Grätz, Prashant Changoer, Dapi Menglin Chiang, Johannes Kersting, Martin Jaeger, Romana Netea-Maier, Susanne I. Wudy, Christina Ludwig, Markus List, Benedikt Kirchner, Marlene Reithmair, Mi
HTA181 How Can Health Technology Assessment Help in Addressing Drug Repurposing Challenges? A Conceptual Framework
T. Abu-Zahra, S. Grimm, M. Scholte, M. Joore
Molecular interaction networks and drug development: Novel approach to drug target identification and drug repositioning
The FASEB Journal· 2025DOI Joseph Loscalzo
Nutritional L-Citrulline and Tetrahydrobiopterin in Peripheral Artery Disease
Daniel Sedding, Tim M. Schmidt, Heike Bähre, Udo Bavendiek, Ana I. Casas, Suzi Chen, Vu Thao-Vi Dao, Mahmoud H. Elbatreek, Frank Gutzki, Andreas Hahn, Pamela Kleikers, Thomas Krahn, Cecilia Macchiusi
Revising EU pharmaceutical legislation: will it foster drug repurposing?
Drug Discovery Today· 2025DOI Mirre Scholte, Sabine E. Grimm, Bianca Pauly, Frank Verbeeck, Anna M.G. Pasmooij, Barend Bouma, Jorika van Duijn-Wiersma, Emre Guney, Aaron S. Kesselheim, Harald H.H.W. Schmidt, Manuela A. Joore
Synergistic Network Pharmacology: Preclinical Validation and Clinical Safety in Acute Ischemic Stroke
Journal of the American Heart Association· 2025DOI Ana I. Casas, Cristian Nogales, Rebecca D. Szepanowski, Mahmoud H. Elbatreek, Elisa Anastasi, Sepideh Sadegh, James Skelton, Benedikt Frank, Anil Wipat, Jan Baumbach, Christoph Kleinschnitz, Harald H.
Transforming literature screening: The emerging role of large language models in systematic reviews
Proceedings of the National Academy of Sciences· 2025DOI Fernando M. Delgado-Chaves, Matthew J. Jennings, Antonio Atalaia, Justus Wolff, Rita Horvath, Zeinab M. Mamdouh, Jan Baumbach, Linda Baumbach
Trends in Fills, Spending, and Prices of Doxepin for Insomnia
Christopher L. Cai, Aaron S. Kesselheim, Benjamin N. Rome
Unveiling the interplay between soluble guanylate cyclase activation and redox signalling in stroke pathophysiology and treatment
Biomedicine & Pharmacotherapy· 2025DOI Alexander G. Grønning, Sebastian E. Vonhof, Mahmoud Elbatreek, Anna Hamker, Rebecca D. Szepanowski, Svenja C. Erkelenz, Friederike Langhauser, Javier Egea, Manuela G. Lopez, Jan Baumbach, Christoph K
Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing
Nucleic Acids Research· 2024DOI Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Bader, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga Zolotareva, Jan Baumbach
DysRegNet: Patient‐specific and confounder‐aware dysregulated network inference towards precision therapeutics
British Journal of Pharmacology· 2024DOI Johannes Kersting, Olga Lazareva, Zakaria Louadi, Jan Baumbach, David B. Blumenthal, Markus List
Explainable drug repurposing via path based knowledge graph completion
Scientific Reports· 2024DOI Ana Jiménez, María José Merino, Juan Parras, Santiago Zazo
Phenomics and Robust Multiomics Data for Cardiovascular Disease Subtyping
Arteriosclerosis, Thrombosis, and Vascular Biology· 2024DOI Enrico Maiorino, Joseph Loscalzo
Repurposing Drugs for the Treatment of COVID-19 and Its Cardiovascular Manifestations
Circulation Research· 2024DOI Rui-Sheng Wang, Joseph Loscalzo
scDrugPrio: a framework for the analysis of single-cell transcriptomics to address multiple problems in precision medicine in immune-mediated inflammatory diseases
Samuel Schäfer, Martin Smelik, Oleg Sysoev, Yelin Zhao, Desiré Eklund, Sandra Lilja, Mika Gustafsson, Holger Heyn, Antonio Julia, István A. Kovács, Joseph Loscalzo, Sara Marsal, Huan Zhang, Xinxiu Li, Danuta Gawel, Hui Wang, Mikael Benson
Multiomics Network Medicine Approaches to Precision Medicine and Therapeutics in Cardiovascular Diseases
Arterioscl er Thromb Vasc Biol· 2023DOI Wang RS, Maron BA, Loscalzo J
Re-Addressing Dementia by Network Medicine and Mechanism-Based Molecular Endotypes
Journal of Alzheimer 's Disease· 2023DOI Mayra Pacheco Pachado, Ana I Casas, Mahmoud H Elbatreek, Cristian Nogales, Emre Guney, Alberto J Espay, Harald H H W Schmidt
Thromboinflammatory challenges in stroke pathophysiology
Seminars in Immunopathology· 2023DOI R.D Szepanowski, S Haupeltshofer, S.E Vonhof, B Frank, C Kleinschnitz, A.I Casas