Collaborative development and dissemination of workflows and techniques for using Correlative Light, Electron and X-ray Microscopy to progress research into the understanding and treatment of diseases

MSCA (Marie Skłodowska-Curie)HORIZON-TMA-MSCA-DNID: 101120151
EC Contribution
€24,806
Consortium Size
12 orgs
Start Year
2023
Summary

Correlative multimode imaging is the only way to reveal a composite view of a biological sample with the multidimensional information about its macro-, meso- and microscopic structure, dynamics, function and chemical composition that is required in order to understand biomedical processes and diseases.Project CLEXM addresses an urgent need to demonstrate, promote and disseminate the benefits of this technique in the fields of disease and drug therapy research and especially to early-career researchers. The premise of project CLEXM is that there is a growing need for disease and drug therapy researchers to understand the linkages between structural and functional changes that occur in a cell and to be able to observe these from the cellular (micrometre) to the molecular (nanometre) scale. Correlative Light and Electron Microscopy (CLEM) is the current state-of-the-art for achieving this, but the technique is extremely complex and slow. CLEXM postulates that the integration of a third imaging modality, Soft X-ray Tomography (SXT), into CLEM will make it easier and faster for researchers to correlate cellular structure with cellular function. Correlative Light, Electron and X-ray Microscopy (CLEXM) can be combined in a number of ways and the benefits will be demonstrated in a number of different use cases. This would be too difficult and too much to achieve as a single research project or as a single MSCA Postdoctoral Fellowship, however, it lends itself to be most easily achieved as a network of complementary individual projects, under an MSCA Doctoral Network action.The overarching objective of project CLEXM is to provide high-level training in the field of correlative multimode imaging to a new generation of doctoral candidates to provide them with the transferrable skills necessary for thriving careers in a high-growth area that will aid researchers in their quest to understand disease and to develop effective therapies.

Consortium (12)

Project Results (21)

Source: CORDIS, the EU research results database.

Publications (15)
Cryogenic Super-Resolution Fluorescence, Electron, and X-ray Microscopy -- A Novel Correlative Nanoscale Imaging Workflow to Reveal Nanoparticle Internalization into Cancer Cells
· 2025DOI
Pavitra Sokke Rudraiah, Louisa Herbsleb, Michaela Salakova, Henriette Gröger, Anna Maria Steyer, Frauke Alves, Claus Feldmann, Andreas Walter
Harnessing 3D cell models and high-resolution imaging to unveil the mechanisms of nanoparticle-mediated drug delivery
Frontiers in Bioengineering and Biotechnology· 2025DOI
Alannah S. Chalkley, Maëva T. Lopez, Margaritha M. Mysior, Madeleen C. Brink, Suainibhe Kelly, Jeremy C. Simpson
Histidine-modified UiO-66(Zr) nanoparticles as an effective pH-responsive carrier for 5-fluorouracil drug delivery system: A possible pathway to more effective brain cancer treatments
Chemical Engineering Journal· 2025DOI
Alexandra Migasová, Ľuboš Zauška, Tomáš Zelenka, Dominik Volavka, Marta Férová, Terézia Gulyásová, Silvia Tomková, Michaela Saláková, Veronika Kuchárová, Tomáš Samuely, Jozef Bednarčík, Cyril Slabý, Mariana Máčajová, Boris Bilčík, Tim Schubert, Andreas Walter, Virginie Hornebecq, Veronika Huntošová, Miroslav Almáši
Integrating Cryo Soft X-Ray Tomography into CLEM and Volume EM Correlative Workflows
Microscopy and Microanalysis· 2025DOI
Sergey Kapishnikov, Paul Sheridan, William Fyans, Fergal O’Reilly, Tony McEnroe, Kenneth Fahy
Rapid hepatitis C virus replication machinery removal after antiviral treatment with DAA monitored by multimodal imaging
Structure· 2025DOI
Victoria Castro, Gema Calvo, Ana J. Pérez-Berná, Kevin Mamprin, Sergey Kapishnikov, David Rogers, Stephen O'Connor, Paul Sheridan, Kenneth Fahy, Eva Pereiro, Pablo Gastaminza
Soft X-Ray Reveals Chromatin Remodeling in Human CD4 T Cells
Microscopy and Microanalysis· 2025DOI
Fariha Mahzabin Annesha, Ayse Erozan, Swetha Ananth, Oliver T Fackler, Venera Weinhardt
Soft X-ray tomography reveals variations in B. subtilis biofilm structure upon tasA deletion
npj Biofilms and Microbiomes· 2025DOI
Chatzimpinou, Anthoula; Diehl, Anne; Harhoff, A Tobias; Driller, Kristina; Vanslembrouck, Bieke; Chen, Jian-Hua; Kairišs, Kristaps; Loconte, Valentina; Le Gros, Mark A; Larabell, Carolyn; Turgay, Kürşad; Oschkinat, Hartmut; Weinhardt, Venera
Spatially-Informed Multi-Stage Active Learning for Segmentation of Nucleus in Soft X-ray Tomography
2025 IEEE Symposium on Computational Intelligence in Image, Signal Processing and Synthetic Media (CISM)· 2025DOI
Ayse Erozan, Alexander Zeilmann, Anthoula Chatzimpinou, Fariha Mahzabin Annesha, Vincent Heuveline, Venera Weinhardt
Super-resolution mapping of the ankle link proteins ADGRV1 and PDZD7 in developing auditory hair cells
iScience· 2025DOI
Baptiste Colcombet-Cazenave, Gaël Moneron, Antonio El Helou, David DiGregorio, Vincent Michel, Nicolas Wolff
The bacterial type three secretion system induces mechanoporation of vacuolar membranes
PLOS Biology· 2025DOI
Léa Swistak, Marvin Albert, Camila Valenzuela, Elif Begum Gokerkucuk, François Bontems, Stéphane Tachon, Keith T. Egger, Anastasia D. Gazi, Anna Sartori-Rupp, Cammie F. Lesser, Perrine Paul-Gilloteaux, Jean-Yves Tinevez, Matthijn Vos, Jost Enninga
The VapBC Toxin–Antitoxin System Enhances<i>Shigella flexneri</i>Fitness Through Coordination of Metabolic Stress Adaptation and Virulence
· 2025DOI
Estelle Saifi, Elisabeth Ageron, Keith Egger, Caroline Reisacher, Eric Frapy, Morgan Lamberioux, Shelley Payne, Jost Enninga, Laurence Arbibe
<scp>CELS</scp>‐<scp>3D</scp>—Cutting edge light source for exciting fluorescence in microtome‐based <scp>3D</scp> microscopy and targeted correlative microscopy
Journal of Anatomy· 2024DOI
Vladyslav Denyshchenko, Christopher Evans, Tiina O'Neill, Jakub Krstev, Emilia Filipczak, Silas O'Toole, Vladimir Lobaskin, Dimitri Scholz
Elimination of HCV replication machinery early after antiviral treatment with DAA monitored by multimodal microscopy
BIO Web of Conferences· 2024DOI
Victoria Castro, Gema Calvo, Ana Pérez-Berna, David Rogers, Stephen O'Connor, Sergey Kapishnikov, Paul Sheridan, Eva Pereiro, Kenneth Fahy, Pablo Gastaminza
Rapid HCV Replication Machinery Removal after Antiviral Treatment with DAA Monitored by Multimodal Imaging
Microscopy and Microanalysis· 2024DOI
Victoria Castro, Gema Calvo, Ana Pérez-Berna, David Rogers, Stephen O’Connor, Sergey Kapishnikov, Paul Sheridan, Eva Pereiro, Kenneth Fahy, Pablo Gastaminza
SARS-CoV-2 and HCV infection and antiviral treatment monitored by multimodal imaging
BIO Web of Conferences· 2024DOI
Ana Joaquina Perez-Berna, Kevin Mamprin, Victoria Castro, Gema Calvo, Ricardo Valcárcel, Eva Pereiro, Pablo Gastaminza
Deliverables (5)
Documents, reports
Documents, reports
Websites, patent fillings, videos etc.
Other Results (1)
Periodic Reporting for period 1 - CLEXM (Collaborative development and dissemination of workflows and techniques for using Correlative Light, Electron and X-ray Microscopy to progress research into the understanding and treatment of diseases)